Selected Publications

For citation data and an up to date list of all publications, please see Jon Goodall’s Google Scholar Profile. If final papers are published in a journal without open access, the preprint manuscript (the version of the manuscript before final edits and typesetting were completed) is provided in accordance with the copyright license from the journal.

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Hydrologic Model Sensitivity to Temporal Aggregation of Meteorological Forcing Data: A Case Study for the Contiguous United States

Van Beusekom, A. E., Hay, L. E., Bennett, A. R., Choi, Y.-D., Clark, M. P., Goodall, J. L., Li, Z., Maghami, I., Nijssen, B. and Wood, A. W.
Journal of Hydrometeorology, 2022
Final Article

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Toward open and reproducible environmental modeling by integrating online data repositories, computational environments, and model Application Programming Interfaces

Y. D. Choi, J. L. Goodall, J. M. Sadler, A. M. Castronova, A. Bennett, Z. Li, B. Nijssenc, S. Wang, M. P. Clark, D. P. Ames, J. S. Horsburgh, H. Yi, C. Bandaragoda, M. Seul, R. Hooper, D. G.Tarboton
Environmental Modelling & Software, doi:10.1016/j.envsoft.2020.104888, In Press
Final Article (open access)

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Flood mitigation in coastal urban catchments using real-time stormwater infrastructure control and reinforcement learning

B. D. Bowes; A. Tavakoli; C. Wang; A. Heydarian; M. Behl; P. A. Beling; J. L. Goodall
Journal of Hydroinformatics, doi:10.2166/hydro.2020.080, In Press
Final Article (open access)

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A taxonomy for reproducible and replicable research in environmental modelling

B. T. Essawy, J. L. Goodall, D. Voce, M. M. Morsy, J. M. Sadler, Y. D. Choi, D. G. Tarboton, T. Malik
Environmental Modelling & Software, doi:10.1016/j.envsoft.2020.104753, December 2020
Final Article ~ Preprint

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Deep reinforcement learning with uncertain data for real-time stormwater system control and flood mitigation

A. M. Saliba, B. D. Bowes, S. Adams, P. A. Beling, J. L. Goodall
Water, doi:10.3390/w12113222, November 2020
Final Article (open access)

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Training machine learning surrogate models from a high-fidelity physics‐based model: Application for real-time street-scale flood prediction in an urban coastal community

F. T. Zahura, J. L. Goodall, J. M. Sadler, Y. Shen, M. M. Morsy, M. Behl
Water Resources Research, doi:10.1029/2019WR027038, October 2020
Final Article (open access)

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Position paper: Open web-distributed integrated geographic modelling and simulation to enable broader participation and applications

M. Chen, A. Voinov, D. P. Ames, A. J. Kettner, J. L. Goodall, A. J. Jakeman, M. Barton, Q. Harpham, S. M. Cuddy, C. DeLuca, S. Yue, J. Wang, F. Zhang, Y. Wen, G. Lu
Earth Science Reviews, doi:10.1016/j.earscirev.2020.103223, August 2020
Final Article (open access)

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Deep learning using physically-informed input data for wetland identification

G. L. O’Neil, J. L. Goodall, M. Behl, L. Saby
Environmental Modelling & Software, doi:10.1016/j.envsoft.2020.104665, April 2020
Final Article ~ Preprint

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Exploring real-time control of stormwater systems for mitigating flood risk due to sea level rise

J. M. Sadler, J. L. Goodall, M. Behl, B. D. Bowes, and M. M. Morsy
Journal of Hydrology, doi:10.1016/j.jhydrol.2020.124571, April 2020
Final Article ~ Preprint

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Quantifying background nitrate removal mechanisms in an agricultural watershed with contrasting subcatchment base-flow concentrations

W. Zell, T. B. Culver, W. Sanford, J. L. Goodall
Journal of Environmental Quality, doi:10.2134/jeq2018.11.0408, March/April 2020
Final Article ~ Preprint

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Estimating potential climate change effects on the Upper Neuse Watershed water balance using the SWAT model

M. B. Ercan, I. Maghami, B. D. Bowes, M. M. Morsy, and J. L. Goodall
Journal of the American Water Resources Association, doi:10.1111/1752-1688.12813, February 2020
Final Article ~ Preprint

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Flood risk assessment and increased resilience for coastal urban watersheds under the combined impact of storm tide and heavy rainfall

Y. Shen, M. M. Morsy, C. Huxley, N. Tahvildari, and J. L. Goodall
Journal of Hydrology, doi:10.1016/j.jhydrol.2019.124159, December 2019
Final Article ~ Preprint

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Leveraging open source software and parallel computing for model predictive control of urban drainage systems using EPA-SWMM5

J. M. Sadler, J. L. Goodall, M. Behl, M. M. Morsy, T. Culver, and B. D. Bowes
Environmental Modelling & Software, doi:10.1016/j.envsoft.2019.07.009, October 2019
Final Article ~ Preprint

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Precipitation Extremes and Flood Frequency in a Changing Climate in Southeastern Virginia

V. Sridhar, P. Modi, M. M. Billah, P. Valayamkunnath, and J. L. Goodall
Journal of American Water Resources Association, 55(4), doi:10.1111/1752-1688.12752, August 2019
Final Article ~ Preprint

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Using Random Forest Classification and Nationally Available Geospatial Data to Screen for Wetlands over Large Geographic Regions

B. R. Felton, G. L. O’Neil, M. M. Robertson, G. M. Fitch, J. L. Goodall
Water, 11(6), 1158, doi:10.3390/w11061158, June 2019
Final Article (open access)

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Effects of LiDAR DEM Smoothing and Conditioning Techniques on a Topography‐Based Wetland Identification Model

G. L. O’Neil L. Saby L. E. Band, and J. L. Goodall
Water Resources Research, 55(5), doi:10.1029/2019WR024784, May 2019
Final Article ~ Preprint

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Forecasting Groundwater Table in a Flood Prone Coastal City with Long Short-term Memory and Recurrent Neural Networks

B. D. Bowes, J. M. Sadler, M. M. Morsy, M. Behl, and J. L. Goodall
Water, 11(5), 1098, doi:10.3390/w11051098, May 2019
Final Article (open access)

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Condition State Based Civil infrastructure deterioration model on a structure system level

Shen, Y., Goodall, J.L., and Chase, S.B.
Journal of Infrastructure Systems, 25(1), doi:10.1061/(ASCE)IS.1943-555X.0000459, March 2019
Final Article ~ Preprint

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A cloud-based flood warning system for forecasting impacts to transportation infrastructure systems

Morsy, M.M., Goodall, J.L., O’Neil, G.L., Sadler, J.M., Voce, D., Hassan, G., and C. Huxley
Environmental Modelling & Software, 107, 231-244. doi:10.1016/j.envsoft.2018.05.007, September 2018
Final Article ~ Preprint

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Using Geospatial Analysis and Hydrologic Modeling to Estimate Climate Change Impacts on Nitrogen Export - Case Study for a Forest and Pasture Dominated Watershed in North Carolina

Alam, M.J., Ercan, M.B., Zahura, F., and Goodall, J.L
EISPRS Int. Geo-Inf., 7(7), 280-297. doi:10.3390/ijgi7070280, July 2018
Final Article (Open Access)

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Integrating scientific cyberinfrastructure to improve reproducibility in computational hydrology - Example using HydroShare and GeoTrust

Essawy, B. Goodall, J.L., Zell, W. Voce, D., Morsy, M. M., Sadler, J.M., Yuan, Z. and Malik, T.
Environmental Modelling & Software, 105, pg 217-229, doi:10.1016/j.envsoft.2018.03.025, July 2018
Final Article ~ Preprint

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Modeling urban coastal flood severity from crowd-sourced flood reports using Poisson regression and Random Forest

Sadler, J.M., Goodall, J.L. and Spencer, K.
Journal of Hydrology, 559, 43–55, doi:10.1016/j.jhydrol.2018.01.044, April 2018
Final Article ~ Preprint

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Evaluating the potential for site-specific modification of LiDAR DEM derivatives to improve environmental planning-scale wetland identification using Random Forest classification

O’Neil, G.L., Goodall, J.L. and Watson, L.T.
Journal of Hydrology, 559, 192–208, doi:10.1016/j.jhydrol.2018.02.009, April 2018
Final Article ~ Preprint

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Feasibility of using existing web services for on-demand data access within distributed environmental decision support systems

Sheffield, S. F., J. L. Goodall, M. M. Morsy, A. B. Chen
Journal of Hydroinformatics, doi:10.2166/hydro.2017.092, March 2018
Final Article ~ Preprint

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A Method for Rapidly Assessing the Overtopping Risk of Bridges due to Flooding over a Large Geographic Region.

Shen, Y., J.L. Goodall, S.B. Chase
Journal of American Water Resources Association, doi:10.1111/1752-1688.12583, December 2017
Final Article ~ Preprint

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Impact of Sea Level Rise on Roadway Flooding in the Hampton Roads Region of Virginia

Sadler, J.M., N. Haselden, K. Mellon, A. Hackel, V. Son, J. Mayfield, A. Blase, J.L. Goodall
Journal of Infrastructure Systems, 23(4), doi:10.1061/(ASCE)IS.1943-555X.0000397, December 2017
Final Artcile ~ Preprint

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Effect of Rain Gauge Proximity on Rainfall Estimation for Problematic Urban Coastal Watersheds in Virginia Beach, VA USA.

Sadler, J.M., J.L. Goodall, M.M. Morsy
Journal of Hydrologic Engineering, 22(9), doi:10.1061/(ASCE)HE.1943-5584.0001563, September 2017
Final Article ~ Preprint

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The Impact of Projected Climate Change Scenarios on Nitrogen Yield at a Regional-Scale for the Contiguous United States

Alam, M.J., Goodall, J.L., Bowes, B.D., and Girvetz, E.H.
Journal of American Water Resources Association 53(4), pp.854–870. doi:10.1111/1752-1688.12537, August 2017
Final Article ~ Preprint

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Design of a metadata framework for environmental models with an example hydrologic application in HydroShare

Morsy, M.M., J.L.Goodall, A.M. Castronova, P. Dash, V. Merwade, J.M. Sadler, M.A. Rajib, J.S. Horsburgh, and D.G. Tarboton
Environmental Modelling & Software, 93, pp.13-28. doi:10.1016/j.envsoft .2017.02.028, July 2017
Final Article ~ Preprent

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Evaluation of the OntoSoft Ontology for describing metadata for legacy hydrologic modeling software

Essawy, B.T., J.L. Goodall, H. Xu, and Y. Gil
Environmental Modelling & Software, 92, pp.317-329. doi:10.1016/j.envsoft.2017.01.024, June 2017
Final Article ~ Preprint

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Comparing Costs of Onsite Best Management Practices to Nutrient Credits for Stormwater Management - A Case Study in Virginia

Nobles, A.L., J.L. Goodall, and G.M. Fitch
JAWRA Journal of the American Water Resources Association. 53(1), pp. 131-143. doi:10.1111/1752-1688.12487, February 2017
Final Article ~ Preprint

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Toward the Geoscience Paper of the Future - Best practices for documenting and sharing research from data to software to provenance

Gil, Y., C.H. David, I. Demir, B. T. Essawy, R. W. Fulweiler, J. L. Goodall, L. Karlstrom, H. Lee, H. J. Mills, J .H. Oh, and S. A. Pierce
Earth and Space Science, 3, 388—415, doi:10.1002/2015EA000136, October 2016
Final Article ~ Preprint

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Distributed Stormwater Controls for Flood Mitigation within Urbanized Watersheds - Case Study of Rocky Branch Watershed in Columbia, South Carolina

Morsy, M. M., J. L. Goodall, F. Shatnawi, and M. E. Meadows
Journal of Hydrologic Engineering, 05016025. doi:10.1061/( ASCE)HE.1943-5584.0001430, November 2016
Final Article ~ Preprint

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Server-side workflow execution using data grid technology for reproducible analyses of data-intensive hydrologic systems

Essawy, B. T., J. L. Goodall, H. Xu, A. Rajasekar, J. D. Myers, T. A. Kugler, M. M. Billah, M. C. Whitton, and R. W. Moore
Earth and Space Science, 3, 163-175, doi:10.1002/2015EA000139, April 2016
Final Article ~ Preprint

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Design and implementation of a general software library for using NSGA-II with SWAT for multi-objective model calibration

Ercan M. B., J. L. Goodall
Environmental Modelling & Software, 84, 112-20. doi:10.1016/j.envsoft.2016.06.017, October 2016
Final Article ~ Preprint

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Hydroshare - Sharing Diverse Environmental Data Types and Models as Social Objects with Application to the Hydrology Domain

Horsburgh, J. S., M. M. Morsy, A. M. Castronova, J. L. Goodall, T. Gan, H. Yi, M. J. Stealey, D. G. Tarboton
Journal of the American Water Resources Association, 52(4), 873-889. doi:10.1111/1752-1688.12363, August 2016
Final Article ~ Preprint

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Using a data grid to automate data preparation pipelines required for regional-scale hydrologic modeling

Billah, M. M., J. L. Goodall, U. Narayan, B. T. Essawy, V. Lakshmi, A. Rajasekar, R. Moore
Environmental Modelling & Software, 78, 31-39. doi:10.1016/j.envsoft.2015.12.010, April 2016
Final Article ~ Preprint

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Documenting Models for Interoperability and Reusability

Parmar, R., K. Wolfe, G. Whelan, G. F. Laniak, M Galvin, and J. L. Goodall
Confrence Proceedings Papers. International Environmental Modelling and Software Society (iEMSs) 8th Intl. Congress on Env. Modelling and Software, Toulouse, France, September 2016
Final Paper

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HydroShare - Promoting Collaborative Publication, Interoperability, and Reuse of Hydrologic Data and Research Products

Horsburgh, J. S., D. G. Tarboton, R. Idaszak, D. P. Ames, J. L. Goodall, V. Merwade, A. Couch, R. P. Hooper, P. Dash, M. J. Stealey, and H. Yi
Conference Proceedings Papers. International Environmental Modelling and Software Society (iEMSs) 8th Intl. Congress on Env. Modelling and Software, Toulouse, France, September 2016
Final Paper

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Simulation of integrated urban infrastructure systems - A service-oriented approach

Goodall, J.L., A. M. Castronova, N. N. Huynh, and J. M. Caicedo, R. Hall
Journal of Computing in Civil Engineering, 29(5). doi:10.1061/(ASCE)CP.1943-5487.0000364, September 2015
Final Article ~ Preprint

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A methodology for evaluating evapotranspiration estimates at the watershed-scale using GRACE

Billah, M.M., J. L. Goodall, U. Narayan, J. T. Reager, V. Lakshmi, J. S. Famiglietti
Journal of Hydrology, 574-586. doi:10.1016/j.jhydrol.2015.01.066, April 2015
Final Article ~ Preprint

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Calibration of SWAT models using the cloud

Ercan, M.B., J.L. Goodall, A.M. Castronova, M. Humphrey, and N. Beekwilder
Environmental Modelling & Software, 62, 188-196. doi:10.1016/j.envsoft.2014.09.002, December 2014
Final Article ~ Preprint

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A hierarchical network-based algorithm for multi-scale watershed delineation

Castronova, A.M. and J.L. Goodall
Computers & Geosciences, 72, 156-166. doi:10.1016/j.cageo.2014.07.014, November 2014
Final Article ~ Preprint

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A Python Tool for Multi-Gage Calibration of SWAT Models using the NSGA-II Algorithm

Ercan, M.B. and J.L. Goodall
Conference Proceedings Papers. International Environmental Modelling and Software Society (iEMSs) 7th Intl. Congress on Env. Modelling and Software, San Diego, CA, USA, Daniel P. Ames, Nigel W.T. Quinn and Andrea E. Rizzoli (Eds.), 2014
Final Paper

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Metadata for Describing Water Models

Morsy, M.M., J.L. Goodall, C. Bandaragoda, A. Castronova, and J. Greenberg
Confrence Proceedings Papers. International Environmental Modelling and Software Society (iEMSs) 7th Intl. Congress on Env. Modelling and Software, San Diego, CA, USA, Daniel P. Ames, Nigel W.T. Quinn and Andrea E. Rizzoli (Eds.), 2014
Final Paper

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An ontology for component-based models of water resource systems

Elag, M. and Goodall, J. L.
Water Resources Research, 49(8), 5077-5091, doi:10.1002/wrcr.20401, 2013
Final Article ~ Preprint

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Coupling climate and hydrological models - Interoperability through Web services

Goodall, J. L., K. D. Saint, M. B. Ercan, L. J. Baily, S. Murphy, C. DeLuca, R. B. Rood
Environmental Modelling & Software, 46, 250-259, doi:10.1016/j.envsoft .2013.03.019, 2013
Final Article ~ Preprint

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Models as Web services using the Open Geospatial Consortium (OGC) Web Processing Service (WPS) standard

Castronova, A.M., J.L. Goodall, and M. M. Elag
Environmental Modelling & Software, 41, 72-83, doi:10.1016/j.envsoft .2012.11.010, 2013
Final Article ~ Preprint

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Estimating watershed-scale precipitation by combining gauge and radar derived observations

Eran, M. B. and J. L. Goodall
Journal of Hydrologic Engineering (ASCE), 18(8), 983-994, doi:10.1061/(ASCE)HE.1943-5584.0000687, 2013
Final Article ~ Preprint

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Driving plug-and-play models with data from Web services - A demonstration of interoperability between CSDMS and CUAHSI-HIS

Peckham, S. D. and J. L. Goodall
Computers & Geosciences, 53, 154-161, doi:10.1016/j.cageo. 2012.04.019, 2013
Final Artice ~ Preprint

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Integrated environmental modeling - A vision and roadmap for the future,

Laniak, G. F., G. Olchin, J. L. Goodall, A. Voinov, M. Hill, P. Glynn, G. Geller, N. Quinn, M. Blind, S. Peckham, S. Reaney, N. Gaber, R. Kennedy, and A. Hughes
Environmental Modelling & Software, 39, 3-23, doi:10.1016/j.envsoft .2012.09.006, 2013
Final Article ~ Preprint

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Integrated modeling within a Hydrologic Information System - An OpenMI based approach

Castronova, A. M., J. L. Goodall, and M. Ercan
Environmental Modelling & Software, doi:10.1016/j.envsoft .2012.02.011, 39, 263-273, 2013
Final Article ~ Preprint

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Simulating watersheds using loosely integrated model components - Evaluation of computational scaling using OpenMI

Castronova, A. M. and J. L. Goodall
Environmental Modelling & Software, 39, 304-313. doi:10.1016/j.envsoft .2012.01.020, 2013
Final Artice ~ Preprint

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Toward disentangling the effect of hydrologic and nitrogen source changes from 1992 to 2001 on incremental nitrogen yield in the contiguous United States

Alam, M. J. and J. L. Goodall
Water Resources Research, 48, W04507, doi:10.1029/2011WR010967, 2012
Final Article ~ Preprint

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Calibration of watershed models using Cloud Computing

Humphry, M., N. Beekwilder, J. L. Goodall, and M. B. Ercan
Conference Proceedings Papers. 8th IEEE International Conference on eScience 2012, Chicago, IL, 2012
Final Article

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Feedback loops and temporal misalignment in component-based hydrologic modeling

Elag, M. M., J. L. Goodall, and A. M. Castronova
Water Resources Research, 47, W12520, doi:10.1029/2011WR010792, 2011
Final Article ~ Preprint

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Annual and interannual variations in terrestrial water storage during and following a period of drought in South Carolina, USA

Billah, M. M. and J. L. Goodall
Journal of Hydrology, 409(1-2), 472-482, doi:10.1016/j.jhydrol.2011.08.045, 2011
Final Article ~ Preprint

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Modeling water resource systems using a service oriented computing paradigm

Goodall, J. L., B. F. Robinson, and A. M. Castronova
Environ. Modell. Softw., 26(5), 573-582, doi:10.1016/j.envsoft.2010.11.013, 2011
Final Article ~ Preprint

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A software library for quantifying regional-scale nitrogen transport within river basin systems

Goodall, J. L., J. P. Fay, and D. L. Bollinger, Jr.
Environ. Modell. Softw., 25(12), 1713-1721, doi:10.1016/j.envsoft.2010.04.007, 2010
Final Article ~ Preprint

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A generic approach for developing process-level hydrologic modeling components

Castronova, A. M. and J. L. Goodall
Environ. Modell. Softw., 25(7), 819-825, doi:10.1016/j.envsoft.2010.01.003, 2010
Final Article ~ Preprint

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Comparison of flood top width predictions using surveyed and LiDAR-derived channel geometries

Shatnawi, F. M. and J. L. Goodall
J. Hydrol. Eng., 15(2), 97-106, doi:10.1061/(ASCE)HE.1943-5584.0000161, 2010
Final Article ~ Preprint

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A spatiotemporal data model for river basin-scale hydrologic systems

Goodall, J. L. and D. R. Maidment
Int. J. Geogr. Inf. Sci., 23(2), 233-247, doi:10.1080/13658810802032193, 2009
Final Article ~ Preprint

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Applications of network analysis for adaptive management of artificial drainage systems in landscapes vulnerable to sea level rise

Poulter, B., J. L. Goodall, and P. H. Halpin
J. Hydrol., 357(3-4), 207-217, doi:10.1016/j.jhydrol.2008.05.022 J. Hydrol., 2009
Final Article ~ Preprint

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A first approach to web services for the National Water Information System

Goodall, J. L., J. S. Horsburgh, T. L. Whiteaker, D. R. Maidment, and I. Zaslavsky
Environmental Modelling & Software, 62, 188-196. doi:10.1016/j.envsoft .2014.09.002, 2008
Final Article ~ Preprint

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Integrating Arc Hydro features with a schematic network

Whiteaker, T. L., D. R. Maidment, J. L. Goodall, and M. Takamatsu
Trans. GIS, 10(2), 219-237, doi:10.1111/j.1467-9671.2006.00254, 2007
Final Article ~ Preprint

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Multi-decadal synthesis of benthic pelagic coupling in the western arctic - Role of cross-shelf advective processes

Dunton, K. H., J. L. Goodall, S. V. Schonberg, J. M. Grebmeier, and D. R. Maidment
Deep-Sea Res. Pt. II, 52(24-26), 3462-3477, doi:10.1016/j.dsr2.2005.09.007, 2006
Final Article ~ Preprint